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Table 1 Predicted HLA-B8 binding peptides derived from LMP2.

From: Cytolytic T lymphocytes from HLA-B8+donors frequently recognize the Hodgkin's lymphoma associated latent membrane protein 2 of Epstein Barr virus

LMP2 sequence Amino acid sequence SYFPEITHI rank/score* BIMAS rank/value* PAProC C-terminal cleavage prediction by version I or II NetChop C-terminal cleavage prediction by version 2.0
172-179 AAAQRKLL 38/22 18/16.0 +/+ -
234-242 AYRRRWRRL 19/24 29/8.0 +/+ +
345-352 CPLSKILL 18/26 28/16.0 -/+ -
347-355 LSKILLARL 39/20 39/4.0 +/+ +
350-357 ILLARLFL 28/25 38/8.0 +/- -
352-360 LARLFLYAL 29/22 19/16.0 -/+ +
  1. * Separate predictions were performed for octamers (X8) and nonamers (X9). Therefore, each rank can appear twice. Predicted scores or values for the two MHC ligand prediction programs SYFPEITHI and BIMAS as well as the proteasomal cleavage prediction programs PAProC and NetChop are shown.