Cytolytic T lymphocytes from HLA-B8+donors frequently recognize the Hodgkin's lymphoma associated latent membrane protein 2 of Epstein Barr virus

Table 1 Predicted HLA-B8 binding peptides derived from LMP2.

LMP2 sequence	Amino acid sequence	SYFPEITHI rank/score*	BIMAS rank/value*	PAProC C-terminal cleavage prediction by version I or II	NetChop C-terminal cleavage prediction by version 2.0
172-179	AAAQRKLL	3⁸/22	1⁸/16.0	+/+	-
234-242	AYRRRWRRL	1⁹/24	2⁹/8.0	+/+	+
345-352	CPLSKILL	1⁸/26	2⁸/16.0	-/+	-
347-355	LSKILLARL	3⁹/20	3⁹/4.0	+/+	+
350-357	ILLARLFL	2⁸/25	3⁸/8.0	+/-	-
352-360	LARLFLYAL	2⁹/22	1⁹/16.0	-/+	+

* Separate predictions were performed for octamers (X⁸) and nonamers (X⁹). Therefore, each rank can appear twice. Predicted scores or values for the two MHC ligand prediction programs SYFPEITHI and BIMAS as well as the proteasomal cleavage prediction programs PAProC and NetChop are shown.